Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs6435958 | chr2:217896612 | C/T | 9.08E-5 | 178 | 7.2 | 14.33 | 16.08 | KM Plot |
| PAAD | rs6458441 | chr6:45327401 | G/T | 0.000128 | 177 | 12.2 | 16.1 | 16.48 | KM Plot |
| PAAD | rs6470129 | chr8:124042065 | T/C | 9.59E-5 | 171 | 9.27 | 16.03 | 15.55 | KM Plot |
| PAAD | rs6498405 | chr16:8734353 | G/A | 0.000157 | 178 | 4.93 | 15.5 | 15.6 | KM Plot |
| PAAD | rs6500617 | chr16:4632954 | A/G | 0.000131 | 178 | 15.33 | 15.2 | 17.5 | KM Plot |
| PAAD | rs6518306 | chr21:48073310 | T/C | 6.15E-5 | 175 | 7.47 | 15.62 | 15.37 | KM Plot |
| PAAD | rs652169 | chr11:74678202 | T/A | 9.38E-5 | 178 | 4.27 | 15.38 | 15.67 | KM Plot |
| PAAD | rs6542435 | chr2:118948096 | C/T | 7.34E-5 | 177 | 3.9 | 15.75 | 15.47 | KM Plot |
| PAAD | rs6543106 | chr2:102746449 | A/G | 0.000161 | 177 | 15.87 | 14 | 4 | KM Plot |
| PAAD | rs6546582 | chr2:70497419 | T/C | 0 | 178 | 15.33 | 18.43 | 1.03 | KM Plot |
| PAAD | rs6556040 | chr5:172099698 | T/C | 7.82E-5 | 176 | 15.4 | 16.08 | 3.9 | KM Plot |
| PAAD | rs6556041 | chr5:172099778 | C/T | 7.82E-5 | 176 | 15.4 | 16.08 | 3.9 | KM Plot |
| PAAD | rs6556042 | chr5:172100057 | A/G | 6.93E-5 | 178 | 3.9 | 16.25 | 15.33 | KM Plot |
| PAAD | rs6560812 | chr10:2373105 | A/C | 0 | 172 | 0.4 | 13.53 | 16.03 | KM Plot |
| PAAD | rs6590155 | chr11:125568560 | T/C | 4.48E-5 | 177 | 16.05 | 11.6 | 4.1 | KM Plot |